Identification of Clade-wide Cis-regulatory Elements from Conserved Non-coding Sequences in Solanaceae Genomes

Our computational pipeline

Component 1: Multiple whole-genome alignment

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scripts (MD5:81d7316809fbafd8f6fe762a564337a8)
Input data (MD5:d605781abf3c81aa268f7ef481371a48)
Output data (MD5:a6e3b1f588065535232360f97c911141)

Component 2: Identification of multiple alignment anchors (MAAs)

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scripts (MD5:4707dcec8a38db58dbd09e61e750fc8a)
Input data (MD5:ec8d8c68085d07b2d0d8c73557eb73bd)
Output data (MD5:8755f6790360a484d7a7b70ad5e3a90f)

Component 3: Detection of collinearity among 6 solanaceae plant genomes

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scripts (MD5:94e9e0851e66b1e8ba11f236984e66d0)
Input data (MD5:dff382e80d3626ac499bda8550a9ebd7)
Output data (MD5:62467e8a9d2097b833ea04505ddf11dc)

Component 4: Identification of mostCons elements

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scripts (MD5:8ce2952f518cbbae06c49ee9a32e02ed)
Input data (MD5:11794971b1e53cdb66ab14a9e3ab40dc)
Output data (MD5:d96849de725384829638a65b149a0f6c)

Component 5: Identification of cis-regulatory conserved noncoding elements

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scripts (MD5:67f2c3c8fc318b318b79fdad56fd9cc4)
Input data (MD5:da0baa6d7a51e945552543eccc2d9ad8)
Output data (MD5:26987b0d7c9421057fdb15e7378c95fa)