Type	Cucumis sativus L. var. sativus cv. 9930	Cucumis sativus var. hardwickii PI 183967
Gene	18,652	15,947
Transcript	36,274	24,369
Isoform	28,588	20,430
Gene with two or more spiced variants	8,614	5,350

Type	Cucumis sativus L. var. sativus cv. 9930	Cucumis sativus var. hardwickii PI 183967
RI	4,098	2,153
A3	1,532	1,066
A5	693	534
SE	333	308
MX	17	14
Total	6,673	4,075

Type	Cucumis sativus L. var. sativus cv. 9930		Cucumis sativus var. hardwickii PI 183967
	Gene Ontology	KEGG	Gene Ontology	KEGG
Gene	12,377	4,314	10,364	3,762
Isoform	20,713	6,176	14,370	4,958
No. Term	9,690	393	7,159	393

Feature Group	Cucumis sativus L. var. sativus cv. 9930		Cucumis sativus var. hardwickii PI 183967
	No. Gene	No. Isoform	No. Gene	No. Isoform
Amino acid composition	16,600	28,588	14,366	20,430
Sequence features	16,600	28,588	14,366	20,430
Transmembrane segments	16,600	28,588	14,366	20,430
Secondary structure	16,590	28,574	14,345	20,407
Intrinsically disordered regions	16,401	27,700	14,187	19,979
Signal peptides	1,888	2,218	1,529	1,744
Subcellular localization	16,600	28,588	14,366	20,430
PEST regions	3,933	6,233	3,315	4,552
Low complexity regions	3,454	5,125	3,033	3,985
Coiled coils	2,706	4,562	2,213	3,129
Phosphorylation sites	16,595	28,580	14,363	20,425
N-linked glycosylation sites	12,768	20,992	10,858	15,069
O-GalNAc-glycosylation sites	10,063	15,380	8,559	11,544
Domains	13,965	23,302	11,983	16,866
Motifs	8,114	13,118	6,932	9,570

Cucumis sativus L. var. sativus cv. 9930
Tissue	High quality reads	Concordant pair-aligned reads	High quality transcripts	High quality genes
Ovary	16,705,294	15,374,891	28,326	16,264
Expanded ovary under fertilization	16,438,206	14,993,686	28,161	16,192
Expanded ovary not fertilized	16,401,257	14,782,415	29,070	16,536
Root	16,378,025	14,960,515	27,763	16,500
Stem	22,825,990	20,723,517	25,738	15,670
Leaf	24,731,604	22,005,380	26,742	15,840
Male flower	24,438,476	22,264,498	26,219	15,692
Female flower	21,725,618	19,553,882	27,820	16,312
Tendril	20,302,220	18,518,543	24,293	15,167
Base part of tendril	19,360,735	17,648,016	23,875	15,108

Cucumis sativus var. hardwickii PI 183967
Tissue	High quality reads	Concordant pair-aligned reads	High quality transcripts	High quality genes
Female flower	13,831,615	12,315,663	19,667	14,329
Fruit	12,852,291	11,368,463	17,411	13,674
Leaf	13,831,641	12,134,644	17,326	13,483
Male flower	12,896,872	11,539,454	18,077	13,505
Root	13,227,717	11,680,653	19,354	13,328
Stem	13,472,066	11,729,836	21,023	14,211
Tendril	13,831,588	12,081,107	17,424	13,680