Identification of Clade-wide Cis-regulatory Elements from Conserved Non-coding Elements in Cucurbitaceous Genomes

Our computational pipeline

Component 1: Multiple whole-genome alignment

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scripts (MD5:cdb0ccb244b2205e0ed134166930fb1b)
Input data (MD5:3b42909acdb72c29fc12bc17f7899ac4)
Output data (MD5:84a2c81bd7ce94d1ae88bd71bb2a8a11)

Component 2: Identification of multiple alignment anchors (MAAs)

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scripts (MD5:4707dcec8a38db58dbd09e61e750fc8a)
Input data (MD5: c65da0deff0e0091d29097bdfe2c9fb8)
Output data (MD5: c1e6fffd1c3d5b2b6dba9a7b9ee2e99c)

Component 3: Detection of collinearity among 12 cucurbitaceous plant genomes

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scripts (MD5:756c6e140e76e94454121bee1443ac22)
Input data (MD5:86a660abf6be503087c4322f28fdaa2b)
Output data (MD5:ea2e22b3bbbefba65ab5bf10306e51fa)

Component 4: Identification of mostCons elements

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scripts (MD5:8ce2952f518cbbae06c49ee9a32e02ed)
Input data (MD5:11794971b1e53cdb66ab14a9e3ab40dc)
Output data (MD5:d96849de725384829638a65b149a0f6c)

Component 5: Identification of cis-regulatory conserved noncoding elements

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scripts (MD5:67f2c3c8fc318b318b79fdad56fd9cc4)
Input data (MD5:da0baa6d7a51e945552543eccc2d9ad8)
Output data (MD5:26987b0d7c9421057fdb15e7378c95fa)