Collinear Research1

2way Collinear Browser

Species Tree

Figure: Phylogenetic tree of species included in the 15-way cucumber-based alignment, used to guide MULTIZ merging of pairwise alignments
*The neutral tree is based on 4-fold degenerate sites sampled from Chr 1~7.

Manual:Click the help button on the top of the browse to view tips. Click the setting button to set datasets and browse labels. For more infotmation, please refer to our help page.

Three ways to initialize the browser (By the follwing order):
  1. By URL parameters, for example '/research/collinear?position=Csa6G088160&cutoff=3000bp', only be used while initialization
  2. By Cookies, the browse will remember the last position, and only be used while initialization
  3. By input boxes, chromosome position or gene name(Cucumis sativus's gene name only) are both acceptale.
References:
  1. An updated functional annotation of protein-coding genes in the cucumber genome