Identification of Lineage-related
Cis
-regulatory Elements from Conserved Non-coding Elements in Cucurbitaceous Genomes
The 12 related genomes
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The identified cisRCNEs and its predicted targets in cucurbitaceous genomes
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A quick search interface |
Our computational pipeline
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Citation & Contact us
A quick search interface
Results will be showed in JBrowse[Genome Biol. 2016 Apr 12;17:66.]
Please input cucurbitceous plant name (plant index), Chr, start, end in turn
1:cucumber [
Cucumis savious
] [chr1~chr7]
2:melo [
Cucumis melo
] [chr1~chr12]
3:bottle-gourd [
Langenaria siceraria
] [chr01~chr11]
4:water-melon [
Citrullus lanatus
] [Chr1~Chr11]
5:wax-gourd [
Benincasa hispida
] [NC_052349.1~NC_052360.1]
6:Cmaxima [
Cucurbita maxima
] [Cma_Chr01~Cma_Chr20]
7:pepo [
Cucurbita pepo
] [Cp4.1LG01~Cp4.1LG20]
8:Cmoschate [
Cucurbita moschata
] [Cmo_Chr01~Cmo_Chr20]
9:bitter-gourd [
Momordica charantia
] [BLBB01000001~BLBB01000011]
10:Cargyrosperma [
Cucurbita argyrosperma
] [Carg_Chr01~Carg_Chr20]
11:chayote [
Sechium edule
] [LG01~LG14]
12:sponge-gourd [
Luffa cylindrica
] [CM029395.1~CM029407.1]
Examples:
cucumber,chr1,199736,205540
|
1,chr3,100000,300000
Query