Genome

  AS_events

• File: dom_expression_value.txt Dynamic of transcripts expression among multiple tissues is measured by TPM. As part of this, “0” means TPM of the transcript in this tissue is lower than 1.
• File: dom_AS_events.txt AS events, including alternative splicing type, different splicing coordination, PSI average, PSI range.
• File: dom_PSI_value.txt Inclusion pattern of AS events across tissues. As part of this, “-1” represents no splicing events in this tissue.

  Isoform Features

• File: dom_AA_composition.txt The percentage of 20 types AA for each isoform.
• File: dom_sequence_features.txt Sequence information, including sequence length, molecular weight, gravy, charge, molar extinction coefficient, iso electric point and aliphatic index.
• File: dom_secondary_structrue.txt Description of secondary structure of isoforms, which contains the AA sequence, secondary structure type, and the confidence for each position.
• File: dom_coil.txt Illustration of the coiled region, such as the location, the coiled sequence and the probability.
• File: dom_low_complexity.txt “X” in this file means low complexity region of the isoform.
• File: dom_PEST.txt Possible proteolytic cleavage sites, including potential PEST motif position, PEST sequence, DEPST, hydrophobicity index and score.
• File: dom_transmembrane.txt Demonstrating the transmembrane region and the predicted score.
• File: dom_disorder.txt Illustrating the disordered residues and the suited marks.
• File: dom_motif.txt Mapping to Prosite, containing the location and score.
• File: dom_domain.txt Mapping to Pfam, including the domain information in Pfam, such as region and the e-value.
• File: dom_signalp.txt Description of signal peptide location.
• File: dom_subcellular_location.txt Probability distribution of subcellular location.
• File: dom_phosphorylation.txt Illustrating phosphorylation sites, kinase types and related score.
• File: dom_O_Glycosylation.txt Information about O-GalNAc-glycosylation sites and scores.
• File: dom_N_Glycosylation.txt Information about N-linked glycosylation sites and scores.

  Functions

• File: dom_gene_ontology.txt Isoform functions which were predicted at splice isoform level by Blast2GO, including identifier, aspect and GO name.
• File: dom_pathway.txt Isoform pathways mapping to KEGG by KAAS, including identifier, pathway name.

  Genome

  AS_events

• File: wild_expression_value.txt Dynamic of transcripts expression among multiple tissues is measured by TPM. As part of this, “0” means TPM of the transcript in this tissue is lower than 0.1.
• File: wild_AS_events.txt AS events, including alternative splicing type, different splicing coordination, PSI average, PSI range.
• File: wild_PSI_value.txt Inclusion pattern of AS events across tissues. As part of this, “-1” represents no splicing events in this tissue.

  Isoform Features

• File: wild_AA_composition.txt The percentage of 20 types AA for each isoform.
• File: wild_sequence_features.txt Sequence information, including sequence length, molecular weight, gravy, charge, molar extinction coefficient, iso electric point and aliphatic index.
• File: wild_secondary_structrue.txt Description of secondary structure of isoforms, which contains the AA sequence, secondary structure type, and the confidence for each position.
• File: wild_coil.txt Illustration of the coiled region, such as the location, the coiled sequence and the probability.
• File: wild_low_complexity.txt “X” in this file means low complexity region of the isoform.
• File: wild_PEST.txt Possible proteolytic cleavage sites, including potential PEST motif position, PEST sequence, DEPST, hydrophobicity index and score.
• File: wild_transmembrane.txt Demonstrating the transmembrane region and the predicted score.
• File: wild_disorder.txt Illustrating the disordered residues and the suited marks.
• File: wild_motif.txt Mapping to Prosite, containing the location and score.
• File: wild_domain.txt Mapping to Pfam, including the domain information in Pfam, such as region and the e-value.
• File: wild_signalp.txt Description of signal peptide location.
• File: wild_subcellular_location.txt Probability distribution of subcellular location.
• File: wild_phosphorylation.txt Illustrating phosphorylation sites, kinase types and related score.
• File: wild_O_Glycosylation.txt Information about O-GalNAc-glycosylation sites and scores.
• File: wild_N_Glycosylation.txt Information about N-linked glycosylation sites and scores.

  Functions

• File: wild_gene_ontology.txt Isoform functions which were predicted at splice isoform level by Blast2GO, including identifier, aspect and GO name.
• File: wild_pathway.txt Isoform pathways mapping to KEGG by KAAS, including identifier, pathway name.

  Functions