Juglandaceae Genome Projects

Juglans Genome Downloads

Genomes Project (NCBI BioProject: PRJNA356989)

  • Juglans mandshurica Genome (SampleID:SAMN08193750)

    • Genome Assembly V1.3: 11792 scaffolds, N50: 620 kbp, length: 560 Mbp (download) (annotation)
    • Genome Assembly V2.0: 424 scaffolds, N50: 35.99 Mbp, length: 537.15 Mbp (download) (annotation)
  • Juglans nigra Genome (SampleID:SAMN08193751)

    • Genome Assembly V1.3: 16371 scaffolds, N50: 290 kbp, length: 688 Mbp (download) (annotation)
    • Genome Assembly V2.0: 231 scaffolds, N50: 35.28 Mbp, length: 531.15 Mbp (download) (annotation)
    • Genome Assembly V2.2 (PacBio applied): 1163 scaffolds, N50: 3.33 Mbp, length: 532.2 Mbp (download)
    • Genome Assembly V3.2 (Pseudo chromosome): 16 chromosome and 646 unplaced, length: 534.7 Mbp (download)
  • Juglans regia Genome (SampleID:SAMN08193752)

    • Genome Assembly V1.3: 24095 scaffolds, N50: 369 kbp, length: 664 Mbp (download) (annotation)
    • Genome Assembly V2.0: 200 scaffolds, N50: 35.86 Mbp, length: 525.44 Mbp (download) (annotation)

    Pterocarya Genome Downloads

  • Pterocarya stenoptera Genome (SampleID:PST)

    • Genome Assembly V1.0: 4054 scaffolds, N50: 998 kbp, length: 678 Mbp (download) (annotation)
    • Genome Assembly V2.0: 265 scaffolds, N50: 3.76 Mbp, length: 555.14 Mbp (download) (annotation)

    Platycarya Genome Downloads

  • Platycarya strobilacea Genome (SampleID:PLST)

    • Genome Assembly V1.0: 26046 scaffolds, N50: 1510 kbp, length: 564 Mbp (download) (annotation)
  • Platycarya longipes Genome (SampleID:PLON)

  • Rhoiptelea Genome Downloads

  • Rhoiptelea chiliantha Genome

  • Carya Genome Downloads

  • Carya sinensis Genome

  • Carya cathayensis Genome

  • Engelhardia/Alfaropsis Genome Downloads

  • Engelhardia roxburghiana (Alfaropsis roxburghiana) Genome

Juglandaceae Chloroplast genome Downloads

Chloroplast genomes Project (NCBI BioProject: PRJNA356989)


Citation

Cao, Y., Almeida-Silva, F., Zhang, W. P., Ding, Y. M., Bai, D., Bai, W. N., Zhang, B. W., Van de Peer, Y., & Zhang, D. Y. (2023). Genomic Insights into Adaptation to Karst Limestone and Incipient Speciation in East Asian Platycarya spp. (Juglandaceae). Molecular biology and evolution, 40(6), msad121.1 DOI:10.1093/molbev/msad121
Ding, Y. M., Pang, X. X., Cao, Y., Zhang, W. P., Renner, S. S., Zhang, D. Y., & Bai, W. N. (2023). Genome structure-based Juglandaceae phylogenies contradict alignment-based phylogenies and substitution rates vary with DNA repair genes. Nature communications, 14(1), 617. DOI:10.1038/s41467-023-36247-z
Ding, Y. M., Cao, Y., Zhang, W. P., Chen, J., Liu, J., Li, P., Renner, S. S., Zhang, D. Y., & Bai, W. N. (2022). Population-genomic analyses reveal bottlenecks and asymmetric introgression from Persian into iron walnut during domestication. Genome biology, 23(1), 145. DOI:10.1186/s13059-022-02720-z
Zhang, W. P., Cao, L., Lin, X. R., Ding, Y. M., Liang, Y., Zhang, D. Y., Pang, E. L., Renner, S. S., & Bai, W. N. (2022). Dead-End Hybridization in Walnut Trees Revealed by Large-Scale Genomic Sequence Data. Molecular biology and evolution, 39(1), msab308. DOI: 10.1093/molbev/msab308
Xu, L. L., Yu, R. M., Lin, X. R., Zhang, B. W., Li, N., Lin, K., Zhang, D. Y., & Bai, W. N. (2021). Different rates of pollen and seed gene flow cause branch-length and geographic cytonuclear discordance within Asian butternuts. The New phytologist, 232(1), 388–403. DOI: 10.1111/nph.17564
Zhang, B. W., Xu, L. L., Li, N., Yan, P. C., Jiang, X. H., Woeste, K. E., Lin, K., Renner, S. S., Zhang, D. Y., & Bai, W. N. (2019). Phylogenomics Reveals an Ancient Hybrid Origin of the Persian Walnut. Molecular biology and evolution, 36(11), 2451-2461. DOI: 10.1093/molbev/msz112
Bai, W. N., Yan, P. C., Zhang, B. W., Woeste, K. E., Lin, K., & Zhang, D. Y. (2018). Demographically idiosyncratic responses to climate change and rapid pleistocene diversification of the walnut genus Juglans (Juglandaceae) revealed by whole-genome sequences. New Phytologist. 217:1726-1736 DOI: 10.1111/nph.14917

Contact us

Address:
State Key Laboratory of Earth Surface Processes and Resource Ecology and MOE Key Laboratory for Biodiversity Science and Ecological Engineering,
College of Life Sciences, Beijing Normal University
No.19, Xinjiekouwai Street, Beijing 100875, P.R.China

Postal Code: 100875

Tel: +86-10-58802747

E-mail: baiwn(at)bnu.edu.cn (Dr. Wei-Ning Bai), zhangdy(at)bnu.edu.cn (Dr. Da-Yong Zhang)