Saccharomyces Protein-protein Interaction Database
 
To obtain a version of the complete gold standard positive (GSP) dataset, please contact the author: Kui Lin.
 
Current version
 
GSPdataset_SGD.txt

This file contains the GSP dataset derived from the new release of GO (March 2006) and the yeast annotations from SGD (submitted on March 31, 2006). It contains four columns:

Interaction_ID:
  the unique identifier for an interaction in SPIDer
ProteinA_SGD_ID:
  the unique identifier for interacting partner A in SGD
ProteinB_SGD_ID:
  the unique identifier for interacting partner B in SGD
Connected_component_ID:
  the unique identifier for a connected component (see help for details).
-- note: for the dataset, this identifier ranges from 1 to 23.
 

 

Old version
 
GSPdataset_OrganelleDB.txt (Wu et al. 2006 Nucleic Acids Res 34:2137-2150)

This file contains the GSP dataset derived from the GO (September 2004 release) and the yeast annotations from Organelle DB (Wiwatwattana,N., and A. Kumar. 2005 Nucleic Acids Res 33:D598-604). It contains four columns:

Interaction_ID:
  the unique identifier for an interaction in our local database
ProteinA_OrganelleDB_ID:
  the unique identifier for interacting partner A in Organelle DB
ProteinB_OrganelleDB_ID:
  the unique identifier for interacting partner B in Organelle DB
Connected_component_ID:
  the unique identifier for a connected component (see help for details).
-- note: for the dataset, this identifier ranges from 1 to 16.
 

 

 

Laboratory of Computational Molecular Biology. Beijing Normal University.Friday, July 21 2017. Beijing, China